| Occurrences: |
view occurrences
| id |
8544d24e-c923-4216-9408-1cef2244e851
|
| scientificName |
Perophora japonica
|
| AphiaID |
103758
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGACCTGGCCTTACCTTCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perophora japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103758",
"confidence": 0.94
},
{
"method": "VSEARCH",
"scientificName": "Perophora_japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103758",
"accession": "AB499607.1.1752_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
7.0
|
| id |
c5dd2e21-d795-4993-a5a6-941ba0331fba
|
| scientificName |
Perophora japonica
|
| AphiaID |
103758
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGACCTGGCCTTACCTTCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perophora japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103758",
"confidence": 0.94
},
{
"method": "VSEARCH",
"scientificName": "Perophora_japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103758",
"accession": "AB499607.1.1752_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
1f248356-650e-462f-8873-4186a245e021
|
| scientificName |
Perophora japonica
|
| AphiaID |
103758
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATATTTAAGTTGCTGCGGTTAAAAAGCTCGTAGTTGGATTTTGGGCGCAGGCGGCCGGTCCGTCGCAAGGCGTGCACTGGCCGACCTGGCCTTACCTTCGGTTCCCCGCCGGTGCTCTTGACTGAGTGTCGGCGGCGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Perophora japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103758",
"confidence": 0.94
},
{
"method": "VSEARCH",
"scientificName": "Perophora_japonica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103758",
"accession": "AB499607.1.1752_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Perophora_sagamiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250618",
"accession": "AB104873.1.1720_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662244.1.1230_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_turbinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103756",
"accession": "EU662235.1.1233_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|