PacMAN decision support system

Potential detection of Chaetoceros peruvianus in Fiji

Description:

Potential detection of Chaetoceros peruvianus with confidence medium on 2023-08-15 in material sample USP-24-01-37, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Chaetoceros peruvianus
Heterokontophyta > Bacillariophyceae > Chaetocerotanae incertae sedis > Chaetocerotaceae
WoRMS: 178185

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

146.0

Names:

Occurrences:

view occurrences

id	daf53db3-05af-471d-8323-de248dd5a169
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-37
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	146.0

id	613bead2-62a2-4443-9ad4-9e09b9a61986
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-38
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	127.0

id	a0a7b0a5-4152-4c6e-ae78-0fc7460d4e3b
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-36
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	40.0

id	4238d6c0-7b81-4af4-805c-974d13d967cd
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-50
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	6.0

id	77e53366-6d4a-45c5-8071-49e7d69c810e
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-49
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	1f659856-5876-4cee-a7b8-842ffb8217cf
scientificName	Chaetoceros rostratus
AphiaID	178201
eventDate	2023-08-15
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-48
target_gene	18S
DNA_sequence	TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Chaetoceros rostratus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178201", "accession": "X85391.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "HQ869026.1.871_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "AJ535167.1.1799_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mediophyceae_XXX_sp.", "accession": "AY426893.1.820_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Chaetoceros peruvianus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:178185", "accession": "HQ912650.1.1640_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	3.0

Chaetoceros peruvianus in Fiji

Status

Chaetoceros peruvianus does not have an offial status in Fiji.

Notes

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No notes found.