| Occurrences: |
view occurrences
| id |
238c81d2-d063-4867-9f5d-88f805b64f56
|
| scientificName |
Botryllus
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATATTGGGCGAGCGCGGTCGGTCCGTCGCAGGGCGTGTACTGGTCGCGTTCGTCTCGAGCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botryllus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103529",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "FM244858.1.1786_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.981,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
21.0
|
| id |
299e4eb9-b38d-4416-bc6c-39dd2acf2afc
|
| scientificName |
Botryllus
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATATTGGGCGAGCGCGGTCGGTCCGTCGCAGGGCGTGTACTGGTCGCGTTCGTCTCGAGCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botryllus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103529",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "FM244858.1.1786_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.981,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
17.0
|
| id |
201b27b6-7ffd-43e4-9c66-6a01d5927cb6
|
| scientificName |
Botryllus
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAAAAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATATTGGGCGAGCGCGGTCGGTCCGTCGCAGGGCGTGTACTGGTCGCGTTCGTCTCGAGCTTCGGTTCTCCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Botryllus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103529",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_schlosseri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103862",
"accession": "FM244858.1.1786_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botryllus_planus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:215992",
"accession": "DQ346653.1.1798_U",
"identity": 0.981,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Botrylloides_violacea",
"accession": "AY903927.1.1803_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
12.0
|
|