| Occurrences: |
view occurrences
| id |
20844da8-7815-4fed-b39f-c4252965b6bb
|
| scientificName |
Pseudo-nitzschia seriata
|
| AphiaID |
149152
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-37
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia turgidula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:246609",
"accession": "FJ222752.1.1219_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771191.1.1787_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771189.1.1788_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "JF698747.1.1613_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "HM581774.1.1772_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
16.0
|
| id |
a048c985-fb2e-4d54-9475-fde10b4e58e9
|
| scientificName |
Pseudo-nitzschia seriata
|
| AphiaID |
149152
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-38
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia turgidula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:246609",
"accession": "FJ222752.1.1219_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771191.1.1787_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771189.1.1788_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "JF698747.1.1613_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "HM581774.1.1772_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
8.0
|
| id |
a695f6ef-6f85-4c04-b0e1-d941a40821c5
|
| scientificName |
Pseudo-nitzschia seriata
|
| AphiaID |
149152
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-36
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"confidence": 0.91
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia turgidula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:246609",
"accession": "FJ222752.1.1219_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771191.1.1787_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bacillariophyceae_XXX_sp.",
"accession": "KC771189.1.1788_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "JF698747.1.1613_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pseudo-nitzschia seriata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149152",
"accession": "HM581774.1.1772_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
4.0
|
|