PacMAN decision support system

Potential detection of Ruditapes philippinarum in Fiji

Description:

Potential detection of Ruditapes philippinarum with confidence medium on 2022-10-03 in material sample S77, marker 18S

Confidence:

medium

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Ruditapes philippinarum
Mollusca > Bivalvia > Venerida > Veneridae
WoRMS: 231750 CABI: 61697

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

73.0

Names:

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	20b5e024-8c18-42b4-9eba-86f87b6c4428
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-10-03
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S77
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	73.0

id	fd912a39-b11c-4ff5-b7a8-28b0f73cbed7
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-10-03
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S87
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	19.0

id	765b8fae-53e6-4752-85e3-650ddca485bc
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-10-03
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S74
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	10.0

id	c34a7ccf-4024-403c-9cba-b357473c6763
scientificName	Mercenaria mercenaria
AphiaID	141919
eventDate	2022-10-03
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S79
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAGCTCGAGGTAATGATTAATAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTAGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "confidence": 0.85 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Dosinia japonica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:507589", "accession": "JN996713.1.1831_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Mercenaria mercenaria", "scientificNameID": "urn:lsid:marinespecies.org:taxname:141919", "accession": "AF106073.1.1804_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	10.0

id	b8c56637-4d1f-46ac-8c7d-9d21dfc9df2b
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-10-03
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S78
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	9.0

id	5ad67a8f-7e87-4b79-ab5d-a71ae76deda2
scientificName	Ruditapes philippinarum
AphiaID	231750
eventDate	2022-10-03
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S75
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTGCAGGCTTGCGGTCCGTCTCGCGGCGGTCACTGCTCGTCCTGGCCTCCACGCCGGCGTACCGTCCCTTGGTGCTCTTGACTGAGTGTCTCGGGCGGCCGGAACGTTTACTTTGAAGAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "confidence": 0.84 }, { "method": "VSEARCH", "scientificName": "Paphia textile", "scientificNameID": "urn:lsid:marinespecies.org:taxname:214508", "accession": "JN996721.1.1831_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807341.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "JN807342.1.1833_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "AM774568.1.1781_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Ruditapes philippinarum", "scientificNameID": "urn:lsid:marinespecies.org:taxname:231750", "accession": "EU660736.1.878_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

Ruditapes philippinarum in Fiji

Status

Ruditapes philippinarum does not have an offial status in Fiji.

Notes

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