Occurrences: |
view occurrences
id |
eb067fcc-fc10-4066-a6e5-0d4d17d09482
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
53.0
|
id |
3ac091f4-e904-4f99-a2bc-902d6d9d80c9
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
51.0
|
id |
f5f19683-35f4-46a0-9380-571c965378c9
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGTAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACACGGAGGGGCGGACGGCCGCACTGGTCGCGCTCGCTCCTCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
32.0
|
id |
6727cfd0-b2e5-4709-9dea-efcabe55793d
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
30.0
|
id |
dc29bb18-bac6-40a1-a696-430e6ec62670
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
26.0
|
id |
e289691a-9f5d-4ec0-a892-3988c218d3ff
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
25.0
|
id |
2a2d505c-95c7-4db8-b52d-65f8fa14ec0d
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
7.0
|
id |
5909ad32-5970-4a11-a094-5d8bf9f3cdd1
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
7.0
|
id |
86250720-7bb7-4aa5-add2-defbac0ed18a
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
5.0
|
id |
d69aada5-5aa2-48ce-8ca9-fbccfebb3137
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S45
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAAGAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.988,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
4.0
|
id |
213c33ca-3ead-4083-834b-a2fccfd72c4e
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACACGGAGGGGCGGACGGCCGCACTGGTCGCGCTCGTCCCTCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
de3cb1af-0ad8-4066-af2f-8afad391e242
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S45
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGAAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACGCGGCGGGGCGGACGGCCGCACTGGTCGCACTCGTTCCGCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
3.0
|
id |
378b91c3-9564-406c-9a63-0cdc517a24a3
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S46
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGTAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACACGGAGGGGCGGACGGCCGCACTGGTCGCGCTCGCTCCTCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 0.981,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
2.0
|
id |
4d0cb67e-4147-4380-81bc-b93467d7c465
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S45
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
8ec254fb-8415-409b-b2e3-eca0d55b31bb
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S65
|
target_gene |
18S
|
DNA_sequence |
GCTGGTTTTAGAGTCGGCGAGCCAATGATTAATAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Amathia_verticillata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:851581",
"accession": "KM373518.1.1827_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_citrina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111664",
"accession": "FJ152020.1.1770_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Walkeria_uva",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111676",
"accession": "FJ152044.1.1859_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
2.0
|
id |
b071cfb0-a264-4f14-b6b6-a61000fab234
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S63
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACACGGAGGGGCGGACGGCCGCACTGGTCGCGCTCGTCCCTCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
2.0
|
id |
f484fcb0-0353-4aa0-a64a-1de1455a0d43
|
scientificName |
Amathia imbricata
|
AphiaID |
851593
|
eventDate |
2022-05-25
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
S45
|
target_gene |
18S
|
DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAGCGTCAGACACGGAGGGGCGGACGGCCGCACTGGTCGCGCTCGTCCCTCCGGGCCAGGCGCGGAGGGCGTCCGTCGCTTGCACTTCACCGTGTGAGCGCGGCGCCGCCGCTCGTTCACCTTGAGGAAATTGAACCGCTCAAAG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bowerbankia imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "FJ152022.1.1825_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bowerbankia_imbricata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111667",
"accession": "JN680939.1.1849_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
organismQuantity |
1.0
|
|