| Occurrences: |
view occurrences
| id |
225cd236-fb38-49f9-b125-7b481a2ea635
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S154
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
22.0
|
| id |
7ab17b50-a149-4d3f-be4b-aed4511423c3
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S152
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
8.0
|
| id |
54347923-d471-4233-884a-7ea9a16c61e3
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S137
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
| id |
c2baf36a-96b5-456e-aef7-700ad79f5118
|
| scientificName |
Microcosmus curvus
|
| AphiaID |
250843
|
| eventDate |
2022-05-25
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S154
|
| target_gene |
COI
|
| DNA_sequence |
TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus curvus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250843",
"accession": "KT693194",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Styela canopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103926",
"accession": "MW278578",
"identity": 0.994,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
2.0
|
|