| Occurrences: |
view occurrences
| id |
311fcbb6-35de-412d-b541-29a886a6f4af
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-13
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
115.0
|
| id |
5bb7b00c-6654-4d2b-9f20-df8a0452a7ac
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-20
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
12.0
|
| id |
37ce81c1-b977-4809-a039-d841e9e80c4b
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-16
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
226c53fc-673c-422f-b3e2-a0b2592fb1ce
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-19
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
d7a55abc-4501-4844-ad04-c82457c958d7
|
| scientificName |
Steromphala cineraria
|
| AphiaID |
1039839
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-15
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCAGGGTCGTTCGCGTCGGTCCCTTGCTTCAATGGCTCGGGTACTGCGCGGTGTCGTCCCCCTTGCCAGACCTCTCAAAAAGGTTGCTCTTGACTGAGTGGCCTGCTCGAGTGGCTGGAGAGTTTACTTTGAAAAAATTAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Gibbula cineraria",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141782",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Calliostoma sakashitai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:467253",
"accession": "AB365306.1.1813_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Chaetoderma_nitidulum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:139106",
"accession": "AY340425.1.1003_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Umbonium costatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:556961",
"accession": "AM048646.1.981_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Monilea lentiginosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:718867",
"accession": "EU530085.1.979_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Eurytrochus cognatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1477122",
"accession": "EU530080.1.981_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|