PacMAN decision support system

Potential detection of Obelia bidentata in Fiji

Description:

Potential detection of Obelia bidentata with confidence low on 2022-02-16 in material sample S43, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Obelia bidentata
Cnidaria > Hydrozoa > Leptothecata > Campanulariidae
WoRMS: 117385

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

Reads:

10.0

Names:

Occurrences:

view occurrences

id	22f511de-7802-4799-bc84-4d4440896fa8
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	10.0

id	4e28bdce-beb0-4828-b990-ddbe95aafd0f
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S9
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	9.0

id	621ef088-267c-45b3-8920-ef33c35c31b5
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S21
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	8.0

id	e8ee24b5-04e6-44c5-b40f-8bddbe53dcf5
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.83 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789754.1.1730_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.988, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	5858698c-d8f7-4d31-ba25-e542331db429
scientificName	Obelia bidentata
AphiaID	117385
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S8
target_gene	18S
DNA_sequence	TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Obelia bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "confidence": 0.81 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "AY789755.1.1733_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Obelia_bidentata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:117385", "accession": "FJ550589.1.1733_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Obelia bidentata does not have an offial status in Fiji.

No notes found.