PacMAN decision support system

Potential detection of Subeucalanus crassus in Fiji

Description:

Potential detection of Subeucalanus crassus with confidence low on 2022-02-01 in material sample S1, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Subeucalanus crassus
Arthropoda > Copepoda > Calanoida > Eucalanidae
WoRMS: 104544

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

2.0

Names:

4

Occurrences:

view occurrences

id	90272b1a-74ba-4458-a3a8-b5cefb97b173
scientificName	Subeucalanus
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S1
target_gene	18S
DNA_sequence	TGTTGGTTTTTAAGTTTTGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104173", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "GU969188.1.1794_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "AY192563.1.1612_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus spinifer", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346437", "accession": "AY335856.1.1041_U", "identity": 0.981, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus inermis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346435", "accession": "AY335857.1.1683_U", "identity": 0.981, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	f17418b0-4940-4a0a-ac64-3d6b7e2cc296
scientificName	Subeucalanus crassus
AphiaID	104544
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S1
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCCACAGTCTGAAGTTGGTGTGCTTGCTAGCACTACTGCCTTATAGACTGTAGTTTTGCCAGAGGTGTTAGGGTGCTCTTAATCGAGTGTCCTATCGCACTGGCAGGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "confidence": 0.98 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	a9a7dddd-0dc1-48ca-bf47-91f2a0f6f0f8
scientificName	Subeucalanus pileatus
AphiaID	104547
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S1
target_gene	18S
DNA_sequence	TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "GU969188.1.1794_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "AY192563.1.1612_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus spinifer", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346437", "accession": "AY335856.1.1041_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus inermis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346435", "accession": "AY335857.1.1683_U", "identity": 0.988, "query_cover": 0.9938 } ] }
organismQuantity	2680.0

id	243269c1-202e-4d0e-b9ef-7c1362c08548
scientificName	Subeucalanus pileatus
AphiaID	104547
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S2
target_gene	18S
DNA_sequence	TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "GU969188.1.1794_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "AY192563.1.1612_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus spinifer", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346437", "accession": "AY335856.1.1041_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus inermis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346435", "accession": "AY335857.1.1683_U", "identity": 0.988, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	b4396a32-d2d5-4b59-8b09-7874eb7ee08d
scientificName	Subeucalanus pileatus
AphiaID	104547
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S5
target_gene	18S
DNA_sequence	TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "GU969188.1.1794_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "AY192563.1.1612_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus spinifer", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346437", "accession": "AY335856.1.1041_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus inermis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346435", "accession": "AY335857.1.1683_U", "identity": 0.988, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	6a4217a3-779b-4909-bda8-f58dffe2a901
scientificName	Subeucalanus pileatus
AphiaID	104547
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S14
target_gene	18S
DNA_sequence	TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "GU969188.1.1794_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "AY192563.1.1612_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus spinifer", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346437", "accession": "AY335856.1.1041_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus inermis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346435", "accession": "AY335857.1.1683_U", "identity": 0.988, "query_cover": 0.9938 } ] }
organismQuantity	1.0

id	cad167d8-7621-4bb1-b23f-79984bbd2232
scientificName	Subeucalanus pileatus
AphiaID	104547
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S10
target_gene	18S
DNA_sequence	TGTTGGTTTTTAAGTTTCGACTTAATGATTAATAGGGACAAACGGGGGCATTTGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "GU969188.1.1794_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus pileatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104547", "accession": "AY192563.1.1612_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Subeucalanus crassus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:104544", "accession": "GU969168.1.1739_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus spinifer", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346437", "accession": "AY335856.1.1041_U", "identity": 0.988, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Eucalanus inermis", "scientificNameID": "urn:lsid:marinespecies.org:taxname:346435", "accession": "AY335857.1.1683_U", "identity": 0.988, "query_cover": 0.9938 } ] }
organismQuantity	1.0

Subeucalanus crassus in Fiji

Status

Subeucalanus crassus does not have an offial status in Fiji.

Notes

No notes found.