| Occurrences: |
view occurrences
| id |
251668ff-f578-4245-8eb3-3988663e21a9
|
| scientificName |
Phallusia
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-65
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACGGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACTAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Phallusia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103485",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Phallusia_nigra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103725",
"accession": "FM244845.1.1805_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_ceratodes",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:249976",
"accession": "L12378.1.1821_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Corella_eumyota",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173223",
"accession": "FM244846.1.1733_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phallusia_nigra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103725",
"accession": "KF268455.1.1746_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
33.0
|
| id |
7dd332a4-0ed3-4228-9fcf-a4bd56dc961b
|
| scientificName |
Phallusia
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-64
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACGGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACTAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Phallusia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103485",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Phallusia_nigra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103725",
"accession": "FM244845.1.1805_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_sydneiensis_samea",
"accession": "AF165819.1.1065_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ascidia_ceratodes",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:249976",
"accession": "L12378.1.1821_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Corella_eumyota",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173223",
"accession": "FM244846.1.1733_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phallusia_nigra",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103725",
"accession": "KF268455.1.1746_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
13.0
|
|