| Occurrences: |
view occurrences
| id |
25a159ba-d7a1-405b-ba1a-b7b912795bb6
|
| scientificName |
Malleus regula
|
| AphiaID |
605717
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-31
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTTGGGTGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Malleus regula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:605717",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Malleus regula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:605717",
"accession": "AB594372.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus regula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:605717",
"accession": "HQ329354.1.1775_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus albus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507057",
"accession": "HQ329357.1.1775_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus irregularis",
"accession": "AB594375.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus albus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507057",
"accession": "HQ329356.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
d42df4a4-29fb-4166-9c94-39d62484a8ff
|
| scientificName |
Malleus regula
|
| AphiaID |
605717
|
| eventDate |
2023-08-24
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-29
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTTGGGTGGCCGGGACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Malleus regula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:605717",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Malleus regula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:605717",
"accession": "AB594372.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus regula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:605717",
"accession": "HQ329354.1.1775_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus albus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507057",
"accession": "HQ329357.1.1775_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus irregularis",
"accession": "AB594375.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Malleus albus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507057",
"accession": "HQ329356.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|