| Occurrences: |
view occurrences
| id |
25dc7c6f-126e-4250-831a-54f0bc8b042b
|
| scientificName |
Obelia bidentata
|
| AphiaID |
117385
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCAACCTCCGCAGTAATGATTAAGAGGGACAGTTGGGGGCATCCGTATTTCGTAGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAATTGCGAAAGCATTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Obelia bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "AY789754.1.1730_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "AY789755.1.1733_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "FJ550589.1.1733_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
dbb08ac5-0973-4063-bc99-1533e0983c66
|
| scientificName |
Obelia bidentata
|
| AphiaID |
117385
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Obelia bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "AY789755.1.1733_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "FJ550589.1.1733_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
27d392f5-6285-482e-8735-2c2ec7546c0d
|
| scientificName |
Obelia bidentata
|
| AphiaID |
117385
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCAACCTCCGCAGTAATGATCAAGAGGGACAGTTGGGGGCATCCGTATTTCGCAGTCAGAGGTGAAATTCTTGGATTTGCGAAAGACGAACAATTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Obelia bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "AY789755.1.1733_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Obelia_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117385",
"accession": "FJ550589.1.1733_U",
"identity": 0.981,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|