| Occurrences: |
view occurrences
| id |
b0b5c8c5-6d01-4b0e-98ce-5b30036d3e62
|
| scientificName |
Nephtys
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S10
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
12.0
|
| id |
261484f5-06e2-47a5-80a7-8c15902ae274
|
| scientificName |
Nephtys
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S11
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
7.0
|
| id |
5b1b1a40-39bd-4151-845c-30224564cff8
|
| scientificName |
Nephtys
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S7
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
75572cb9-4878-44f5-a7ce-439878e0013f
|
| scientificName |
Nephtys
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S15
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|