| Occurrences: |
view occurrences
| id |
b2897ccc-8761-4e3b-8a91-b4ebb8fab99a
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S167
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
58.0
|
| id |
268e9698-755c-404c-9a8e-3e86b9a71e66
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S164
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
10.0
|
| id |
31a88c39-f73d-4346-aa86-ecefb73ad017
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S168
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
2.0
|
|