| Occurrences: |
view occurrences
| id |
2768edbf-946b-458b-9548-a772a0e67adb
|
| scientificName |
Pecten jacobaeus
|
| AphiaID |
394429
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S88
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGATCCAGGCTTGCGGTCCACTCCTTGGTGGCTACTGCTCGTCCTGATCTACCTCCCGGTTTTACCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pecten jacobaeus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:394429",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Pecten maximus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140712",
"accession": "EU660803.1.868_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pecten jacobaeus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:394429",
"accession": "EU660804.1.868_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pecten maximus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140712",
"accession": "EU660802.1.868_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Argopecten irradians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156817",
"accession": "L11265.1.1815_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pecten jacobaeus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:394429",
"accession": "EU660806.1.868_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
a47d5739-0893-4415-8428-4b536cdb345e
|
| scientificName |
Pecten jacobaeus
|
| AphiaID |
394429
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S73
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGATCCAGGCTTGCGGTCCACTCCTTGGTGGCTACTGCTCGTCCTGATCTACCTCCCGGTTTTACCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pecten jacobaeus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:394429",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Pecten maximus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140712",
"accession": "EU660803.1.868_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pecten jacobaeus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:394429",
"accession": "EU660804.1.868_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pecten maximus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:140712",
"accession": "EU660802.1.868_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Argopecten irradians",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156817",
"accession": "L11265.1.1815_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pecten jacobaeus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:394429",
"accession": "EU660806.1.868_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|