PacMAN decision support system

Potential detection of Styela canopus in Fiji

Description:

Potential detection of Styela canopus with confidence medium on 2023-04-27 in material sample USP-24-01-98, marker COI

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Styela canopus
Chordata > Ascidiacea > Stolidobranchia > Styelidae
WoRMS: 103926

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.997

Reads:

19.0

Names:

Occurrences:

view occurrences

id	49131b0f-2287-4a78-93da-ac52ccf9976b
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230427_S2B
materialSampleID	USP-24-01-98
target_gene	COI
DNA_sequence	TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	19.0

id	65ce74af-f16c-45e5-b766-78e54d86c15e
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230427_S3B
materialSampleID	USP-24-01-101
target_gene	COI
DNA_sequence	TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	9.0

id	297b5d76-14e5-46c1-8645-4e2e43e70b97
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S1A
materialSampleID	USP-24-01-103
target_gene	COI
DNA_sequence	TTTAGCCGGTAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTACATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGGAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 1, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.997, "query_cover": 0.9968 } ] }
organismQuantity	4.0

id	e4084cf5-a480-4577-a912-0af6da4aa11d
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230427_S2B
materialSampleID	USP-24-01-98
target_gene	COI
DNA_sequence	TTTAGCCGGCAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTGCATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.994, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 0.993, "query_cover": 0.9968 } ] }
organismQuantity	28.0

id	8e3c39ba-2b1c-4ae4-89b7-ebbd19de3bfa
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
eventID	SUVA1_20230427_S2A
materialSampleID	USP-24-01-97
target_gene	COI
DNA_sequence	TTTAGCCGGCAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTGCATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.994, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 0.993, "query_cover": 0.9968 } ] }
organismQuantity	8.0

id	448f3504-615b-4ac0-9b67-dfeeb4dc2233
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S3B
materialSampleID	USP-24-01-106
target_gene	COI
DNA_sequence	TTTAGCCGGCAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTGCATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.994, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 0.993, "query_cover": 0.9968 } ] }
organismQuantity	1.0

id	6144a2ee-77f9-495d-8dc7-56bfa922b7c1
scientificName	Microcosmus curvus
AphiaID	250843
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
eventID	SUVA2_20230427_S3C
materialSampleID	USP-24-01-107
target_gene	COI
DNA_sequence	TTTAGCCGGCAATTTAGCCCACTCAAGAAGAGCTCTTGATTGTGCAATTTTTTCATTGCATTTGGCCAGAATTTCCAGCATTTTAGGATCATTAAATTTTATGACAACAATATTTAATATAAAAACTAAAAGATGGGTTATATTTTCCATGCCTTTGTTTTGTTGAACTGTATTAGTAACTACTTTGTTGCTTTTACTTAGTCTTCCTGTTTTAGCTGCAGCTATTACTATATTACTTTTTGACCGAAATTTAAATACTTCATTTTTTGATCCTGTTAGAGGAAGAGATCCTGTTTTATATCAACACTTGTTT
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Styela canopus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103926", "accession": "MW278578", "identity": 0.994, "query_cover": 0.9968 }, { "method": "VSEARCH", "scientificName": "Microcosmus curvus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:250843", "accession": "KT693194", "identity": 0.993, "query_cover": 0.9968 } ] }
organismQuantity	1.0

Styela canopus in Fiji

Status

Styela canopus does not have an offial status in Fiji.

Notes

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