PacMAN decision support system

Potential detection of Microcosmus squamiger in Fiji

Description:

Potential detection of Microcosmus squamiger with confidence low on 2022-05-25 in material sample S63, marker 18S

Confidence:

low

Risk:

high priority view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Microcosmus squamiger
Chordata > Ascidiacea > Stolidobranchia > Pyuridae
WoRMS: 236666

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.995

Reads:

288.0

Names:

4

Priority lists:

Top 25 Marine non-indigenous species for the Pacific region

Occurrences:

view occurrences

id	76e14fd5-fc70-4935-b291-52ea465147e2
scientificName	Microcosmus
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S63
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	288.0

id	da514ddd-83fc-44cc-96e4-b0de60b692bd
scientificName	Microcosmus
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S46
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	36.0

id	7bc429cc-74af-4391-91b7-aaa499c1dcac
scientificName	Microcosmus
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S45
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	13.0

id	2a681adb-1e5d-4426-9de3-365bcffe033f
scientificName	Microcosmus
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S48
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	10.0

id	4f0baf08-ecf0-41b3-8505-a2fd5387d323
scientificName	Microcosmus
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S47
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103522", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.995, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 0.995, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	4520a8f8-3fce-40a7-ae8a-5389b60976ce
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S63
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	11030.0

id	78ccc8fa-64eb-465d-9d0e-480bc5340d35
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S46
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	130.0

id	41fb8f68-ba68-45d7-89c8-1bf13e61d6a3
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S45
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	109.0

id	ac690df2-9ff2-49bc-b41a-418bf3432dfa
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S48
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	35.0

id	41ad9b0c-a733-440f-bd80-fc49e3bd8fbc
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S47
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	19.0

id	e9a5e79e-ef64-485d-869a-1deec8e2683d
scientificName	Microcosmus exasperatus
AphiaID	103838
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S65
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Microcosmus exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "confidence": 0.93 }, { "method": "VSEARCH", "scientificName": "Microcosmus_exasperatus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103838", "accession": "KT387603.1.1766_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Microcosmus_squamiger", "scientificNameID": "urn:lsid:marinespecies.org:taxname:236666", "accession": "FM244855.1.1786_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	4.0

Microcosmus squamiger in Fiji

Status

Microcosmus squamiger does not have an offial status in Fiji.

Notes

No notes found.