| Occurrences: |
view occurrences
| id |
e17e8e33-f877-4e6d-b2d7-cf3716a33e78
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
24.0
|
| id |
2b40fd99-cbd3-4059-a1d4-b8d38bcaf7b1
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S9
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
6.0
|
| id |
a7de3f8a-8327-4991-9d15-77f34339b981
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
f84c21f6-47ff-43d3-9216-d29e1fb95192
|
| scientificName |
Ciona savignyi
|
| AphiaID |
250292
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTACTGTGCCGTTAGAGGTGAAATTCTTGGATCGGCGCAAGACGAACGACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ciona savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"confidence": 0.96
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01030526.2.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01059881.1228.2676_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ecteinascidia_herdmanni",
"accession": "FM244847.1.1607_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01041541.1.1348_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Ciona_savignyi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250292",
"accession": "AACT01045610.1.1202_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|