PacMAN decision support system

Potential detection of Pinctada radiata in Fiji

Description:

Potential detection of Pinctada radiata with confidence low on 2023-11-28 in material sample USP-24-01-68, marker 18S

Confidence:

low

Risk:

medium view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Pinctada radiata
Mollusca > Bivalvia > Ostreida > Margaritidae
WoRMS: 140890 CABI: 108219

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

54.0

Names:

Occurrences:

view occurrences

id	2bdb4a9e-11af-4e09-9d7f-2b55d3d00189
scientificName	Pinctada fucata
AphiaID	397170
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-68
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGTTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTTGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AY028625.1.1789_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB214458.1.1824_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada maculata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:464497", "accession": "AB594364.1.1711_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada radiata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140890", "accession": "AB214457.1.1824_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB594362.1.1711_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	54.0

id	d198689e-2e95-40e7-900a-04f8bf647531
scientificName	Pinctada fucata
AphiaID	397170
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-68
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACTAACAGCTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGATAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AY028625.1.1789_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB214458.1.1824_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada maculata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:464497", "accession": "AB594364.1.1711_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada radiata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140890", "accession": "AB214457.1.1824_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB594362.1.1711_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	46.0

id	708c91b4-bff5-4d79-8d0c-f30e0098904b
scientificName	Pinctada fucata
AphiaID	397170
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-67
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACTAACAGCTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGATAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AY028625.1.1789_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB214458.1.1824_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada maculata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:464497", "accession": "AB594364.1.1711_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada radiata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140890", "accession": "AB214457.1.1824_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB594362.1.1711_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	5.0

id	acae9b79-aaec-4428-897f-885d2c6e593f
scientificName	Pinctada fucata
AphiaID	397170
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-67
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGTTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCGCTCCTTGGCGGTCACTGCTTGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGACCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AY028625.1.1789_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB214458.1.1824_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada maculata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:464497", "accession": "AB594364.1.1711_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada radiata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140890", "accession": "AB214457.1.1824_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB594362.1.1711_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	5.0

id	9c3c4e3c-1186-4cf0-b52f-26fc0914b266
scientificName	Pinctada fucata
AphiaID	397170
eventDate	2023-11-28
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	USP-24-01-69
target_gene	18S
DNA_sequence	TGTTGGTTTTCGGAACCAGAGGTAATGATTAAGAGGGACTGACGGGGGCATTGGTATTGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACTAACAGCTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGATAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AY028625.1.1789_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB214458.1.1824_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada maculata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:464497", "accession": "AB594364.1.1711_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada radiata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:140890", "accession": "AB214457.1.1824_U", "identity": 1, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Pinctada fucata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:397170", "accession": "AB594362.1.1711_U", "identity": 1, "query_cover": 0.9938 } ] }
organismQuantity	2.0

Pinctada radiata in Fiji

Status

Pinctada radiata does not have an offial status in Fiji.

Notes

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