| Occurrences: |
view occurrences
| id |
b0324715-5a98-4d41-9368-7ea017a5bcb1
|
| scientificName |
Paramphiascella fulvofasciata
|
| AphiaID |
115960
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S9
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"accession": "EU380293.1.1808_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amphiascoides atopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:348699",
"accession": "KC815328.1.1808_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sarsamphiascus kawamurai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:549150",
"accession": "MN541391.1.1767_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sarsamphiascus hawaiiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816",
"accession": "MN496456.1.1692_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
6.0
|
| id |
2d234d9a-cb88-4a33-9bd0-a0cea42ee3b5
|
| scientificName |
Paramphiascella fulvofasciata
|
| AphiaID |
115960
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGCTCCAGGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"accession": "EU380293.1.1808_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amphiascoides atopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:348699",
"accession": "KC815328.1.1808_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sarsamphiascus kawamurai",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:549150",
"accession": "MN541391.1.1767_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Sarsamphiascus hawaiiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:1435816",
"accession": "MN496456.1.1692_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
90a45c8d-a78e-42ca-aa0f-bf6dccba9194
|
| scientificName |
Paramphiascella fulvofasciata
|
| AphiaID |
115960
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S9
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"accession": "EU380293.1.1808_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amphiascoides atopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:348699",
"accession": "KC815328.1.1808_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
f09ccaf6-d292-4f53-90ee-afef9e594934
|
| scientificName |
Paramphiascella fulvofasciata
|
| AphiaID |
115960
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCATATGTTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATCTCGGCGGGCCGGGGGCGGTTCGCTTTATGGCGTGACTGCCCCACTGGCCCGTGTTTTTGGCGGAGGTCGTCGGGTGCTCTTAATCGAGTGTCCTGCGGCGCCGTCAGGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"confidence": 0.9
},
{
"method": "VSEARCH",
"scientificName": "Paramphiascella fulvofasciata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:115960",
"accession": "EU380293.1.1808_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Amphiascoides atopus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:348699",
"accession": "KC815328.1.1808_U",
"identity": 0.976,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|