| Occurrences: |
view occurrences
| id |
2d318e82-43d7-47f2-b8bf-e92813f69862
|
| scientificName |
Thalassiosira minima
|
| AphiaID |
148925
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGGGACCGGTCACGCACTCTGTGTGTGAACTTGGCTCCCTCTGGCCATCCTTGGGGAGATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Thalassiosira minima",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148925",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira minima",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148925",
"accession": "DQ514876.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira sp.",
"accession": "MT489374.1.1643_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira nordenskioeldii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148931",
"accession": "DQ514886.1.1754_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira sp.",
"accession": "GU385526.1.1714_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira nordenskioeldii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148931",
"accession": "JX645093.1.864_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
654351f1-c0ee-4af9-befa-5b7cb4d519fb
|
| scientificName |
Thalassiosira minima
|
| AphiaID |
148925
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCAGGAGGGACCGGTCACGCACTCTGTGTGTGAACTTGGCTCCCTCTGGCCATCCTTGGGGAGATCCTGTTTGGCATTAAGTTGTCGGGCAGGGGATACCCATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Thalassiosira minima",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148925",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira minima",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148925",
"accession": "DQ514876.1.1765_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira sp.",
"accession": "MT489374.1.1643_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira nordenskioeldii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148931",
"accession": "DQ514886.1.1754_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira sp.",
"accession": "GU385526.1.1714_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Thalassiosira nordenskioeldii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:148931",
"accession": "JX645093.1.864_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|