| Occurrences: |
view occurrences
| id |
7d82c466-500b-49f2-ab39-ac071cbf85a8
|
| scientificName |
Thunnus obesus
|
| AphiaID |
127028
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S164
|
| target_gene |
COI
|
| DNA_sequence |
CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTAACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"confidence": 0.86
},
{
"method": "VSEARCH",
"scientificName": "Salmo salar",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127186",
"accession": "MW826614",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Salmo salar",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127186",
"accession": "MW826616",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus albacares",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127027",
"accession": "KM055417",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"accession": "DQ107629",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"accession": "DQ107642",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
| id |
30576d3f-daa8-415a-a769-5023ae1f3bd2
|
| scientificName |
Thunnus obesus
|
| AphiaID |
127028
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S164
|
| target_gene |
COI
|
| DNA_sequence |
CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTGACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"accession": "DQ835869",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"accession": "OL014470",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus atlanticus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159343",
"accession": "OK030802",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Salmo salar",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127186",
"accession": "MW826614",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Salmo salar",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127186",
"accession": "MW826616",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
143.0
|
| id |
52f8421a-5822-4683-b695-27955e7b7b9f
|
| scientificName |
Thunnus obesus
|
| AphiaID |
127028
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S167
|
| target_gene |
COI
|
| DNA_sequence |
CCTTGCCGGCAACCTGGCCCACGCAGGGGCATCAGTTGACCTGACTATTTTCTCACTGCACTTAGCAGGGGTTTCCTCAATTCTTGGGGCAATTAACTTCATCACAACAATTATCAATATGAAACCTGCAGCTATTTCTCAGTATCAAACACCACTGTTTGTATGAGCTGTACTAATTACAGCTGTTCTTCTCCTACTTTCCCTTCCAGTCCTTGCCGCTGGTATTACAATGCTCCTTACAGACCGAAACCTAAATACAACCTTCTTCGACCCTGCAGGAGGGGGAGACCCAATCCTTTACCAACACCTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"accession": "DQ835869",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus obesus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127028",
"accession": "OL014470",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Thunnus atlanticus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159343",
"accession": "OK030802",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Salmo salar",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127186",
"accession": "MW826614",
"identity": 0.997,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Salmo salar",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:127186",
"accession": "MW826616",
"identity": 0.997,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
107.0
|
|