| Occurrences: |
view occurrences
| id |
6378e6f8-9680-46b9-b3fa-6cc6155f595f
|
| scientificName |
Nephtys
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
312310c7-176c-43b1-b9db-4f1f2a9db21a
|
| scientificName |
Nephtys
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|