Occurrences: |
view occurrences
id |
cbc1c096-64c0-4588-8849-695de95e68b5
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-44
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
4144.0
|
id |
7d56164c-3cd2-441b-bd8a-3362da3c9b84
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-64
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
616.0
|
id |
597501e7-8cf2-4124-8594-71c16d9de084
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-43
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
463.0
|
id |
5e6b5bea-0eb9-4b31-acc5-a0eb6644de36
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-65
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
312.0
|
id |
8fac2595-bd76-424f-8ca6-fb31212b49e0
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-33
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
115.0
|
id |
43726311-c955-4723-920b-e011773da21e
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-45
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
75.0
|
id |
e1da2301-58cc-4e4b-aa4e-1d8672b9414e
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-32
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
51.0
|
id |
f178bc95-f5a0-47a7-a323-af3102425bf2
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-34
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
39.0
|
id |
316fea72-b19c-417a-ad87-0d49aa7f650d
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-29
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
31.0
|
id |
4669154c-596f-4408-9e81-ea4a97a22a39
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-30
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
30.0
|
id |
4a446f83-33ca-429d-b79e-beb748bd9c54
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-46
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
25.0
|
id |
5f50f318-34d1-41ee-bc36-3188b94437ee
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.4255
|
decimalLatitude |
-18.13163
|
materialSampleID |
USP-24-01-31
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
21.0
|
id |
c955a5f3-317c-4ce7-9da2-236bd8fd3a2c
|
scientificName |
Apolemia
|
eventDate |
2023-08-24
|
decimalLongitude |
178.42325
|
decimalLatitude |
-18.13513
|
materialSampleID |
USP-24-01-47
|
target_gene |
18S
|
DNA_sequence |
TTGTTGGTTTCTAGGACCGAAGTAATGATTAAGAGGGACAATTGGGGGCATCCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACAACTGCGAAAGCACTTGCCAAGAGTGTTTTCATTAATCAAGAACGAAAGTTAGAGGATCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Apolemia sp.",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Clava_multicornis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:117426",
"accession": "JQ407367.1.1618_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867466.1.870_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "KC583172.1.1095_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "JQ955782.1.960_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hydrozoa_X_sp.",
"accession": "HQ867240.1.879_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
12.0
|
|