| Occurrences: |
view occurrences
| id |
a70e10f4-bb83-48c6-94c3-409310cf5134
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S166
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
38.0
|
| id |
319084e4-65e3-4876-9cac-de4680f4fa38
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S163
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
25.0
|
| id |
ea331e9d-453f-4ec3-8965-23ddcb00fe1d
|
| scientificName |
Magallana bilineata
|
| AphiaID |
836036
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S160
|
| target_gene |
COI
|
| DNA_sequence |
GCTATCAACTTATTCTTATCATGGCGTTTGTATAGACCTTGCTATTTTAAGGCTGCATTTGGCTGGTATTAGCTCTATTTTTAGATCAATTAACTTTATAGTGACCATCAGAAATATGCGGTCTGTTGGCGGGCATTTACTAGCATTATTCCCCTGGTCTATTAAGGTCACATCATTTTTGCTTTTAACCACTCTTCCAGTGTTGGCAGGGGGCCTTACTATACTCCTTACTGATCGTCATTTTAATACGTCTTTTTTTGATCCTGTGGGCGGAGGTGATCCTGTATTGTTTCAGCATTTATTC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Crassostrea madrasensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819168",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373585",
"identity": 1,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661022",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "HQ661023",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373586",
"identity": 0.993,
"query_cover": 0.9967
},
{
"method": "VSEARCH",
"scientificName": "Crassostrea iredalei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:819169",
"accession": "KM373588",
"identity": 0.993,
"query_cover": 0.9967
}
]
}
|
| organismQuantity |
4.0
|
|