| Occurrences: |
view occurrences
| id |
6c23c1fb-8b77-432d-8b3a-0f63951c7890
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-74
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
15.0
|
| id |
9ae4afd8-b6fa-4a3b-9fd6-d6e167e9848d
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
6.0
|
| id |
32650d24-2a97-4c26-b630-692f079e45c7
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-68
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
3.0
|
| id |
853798e8-2967-4635-95e4-0dfc5742464d
|
| scientificName |
Glycera capitata
|
| AphiaID |
130118
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCCGGCCTGCGGTTCACCACACGGTGTCTACTGCCCGTCCGGACCTACCTGCCGGTTTTCCCCTGGTTCTCTTCGTTGAGTGCCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Glycera capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Glycera_lapidum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130123",
"accession": "GQ426560.1.1734_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426558.1.1168_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426557.1.1676_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_capitata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130118",
"accession": "GQ426556.1.1693_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Glycera_onomichiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:328135",
"accession": "AY884163.1.1610_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|