PacMAN decision support system

Potential detection of Symplegma viride in Fiji

Description:

Potential detection of Symplegma viride with confidence low on 2022-02-16 in material sample S43, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Symplegma viride
Chordata > Ascidiacea > Stolidobranchia > Styelidae
WoRMS: 212501

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

663.0

Names:

4

Occurrences:

view occurrences

id	dc6b0ccd-d0e2-4436-ae1d-8aca56ce18b3
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	663.0

id	32ba051a-f7ff-45b8-baf3-e1ec927cd2a1
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S9
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	389.0

id	5128fae9-74e2-4617-a020-60b760e261c9
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S21
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	16.0

id	51325f96-0ee8-412a-bd0c-e2e0bc2b9c73
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S22
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	10.0

id	75077879-c12d-4ec3-bef4-e409290cbd4e
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S8
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	76c58690-c5b9-46b1-ac29-e7452a89f200
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S43
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	1.0

id	a84fd424-f79f-4c4b-ac16-034fb89f2520
scientificName	Symplegma
eventDate	2022-02-16
decimalLongitude	178.425933
decimalLatitude	-18.1293
materialSampleID	S9
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Symplegma viride in Fiji

Status

Symplegma viride does not have an offial status in Fiji.

Notes

No notes found.