| Occurrences: |
view occurrences
| id |
c9e82d2c-0d1b-4337-83dc-a2986b4d7324
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S21
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
90.0
|
| id |
33f4fb68-9dd8-4453-9ae4-e1b092e262f3
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S22
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
43.0
|
| id |
a1a93943-e2fc-4d45-8b4a-a68fbac2e6c8
|
| scientificName |
Pseliodinium fusus
|
| AphiaID |
1474876
|
| eventDate |
2022-02-16
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S43
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGATGACCGGTCCGCCCTCTGGGTGAGTATCTGGCTCAGCCTGGGCATCCTCTTGGGGAACGTAGCTGCACTTGACTGTGTGGTGCGGTATCCAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664890.1.1755_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790150.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Ceratoperidinium falcatum",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:839164",
"accession": "KP790151.1.1330_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Torquentidium convolutum",
"accession": "MF948385.1.1719_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Dinophyceae_XXX_sp.",
"accession": "AY664946.1.1755_U",
"identity": 0.986,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
14.0
|
|