| Occurrences: |
view occurrences
| id |
de5b2d33-f20f-4873-b288-94533d254142
|
| scientificName |
Microcosmus
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S15
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTTACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103522",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.995,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 0.995,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
34c3083b-51bb-4df6-8d4b-7ba47f843bc6
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S42
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
15.0
|
| id |
b64e6f88-c81d-4539-a78f-7ffebdc5d589
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S18
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
5b96fdfe-e2be-424a-a870-2ac044a9fbf1
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S16
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
6c8912f5-2e8d-4622-9261-3e1ccc85d488
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S39
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
bfaa2ebd-e2f4-46b0-8d03-9d28b7c04e95
|
| scientificName |
Microcosmus exasperatus
|
| AphiaID |
103838
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S17
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGCTGGGCGCCGCCGGTCCGTCGCAAGGCGTGTCACTGGCGGCGCTCTCCCCCGATTTTCGGTTCGCCCGATCGGTGCTCTTGACTGAGTGTCGTCGGTGGCCGATGAGATTACTTTGAAAAAATTAGAGTGTTCAAAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Microcosmus exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"confidence": 0.93
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_exasperatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103838",
"accession": "KT387603.1.1766_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Microcosmus_squamiger",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:236666",
"accession": "FM244855.1.1786_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|