| Occurrences: |
view occurrences
| id |
a9cb40be-d510-4766-b635-1dfbbd06e4e5
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S170
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
570.0
|
| id |
34e8954f-b21e-4c70-92fa-79a900bc12d8
|
| scientificName |
Bugula neritina
|
| AphiaID |
111158
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S168
|
| target_gene |
COI
|
| DNA_sequence |
TTATCATCGGGCTTAGGTCACAGAGGAGCAGCTGTGGATTTAGCCATTTTCTCTTTACACCTTGCCGGTGTATCCTCAATTTTAGGAGCAATTAACTTTATTACTACAACAATTAATATACGAAGAAACTCTATAAAAATAATTCAAATCCCTTTATTTATTTGGGCAGTTTTTATTACAGCCATTTTGTTACTTTTATCTTTACCAGTGCTAGCTGGAGCTATTACTATACTACTAACCGATCGTAATGTTAATACATCTTTTTTTGACCCTGCTGGAGGGGGGGATCCTATTTTATACCAACACTTATTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129735",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129736",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129737",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129738",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Bugula neritina",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111158",
"accession": "KC129739",
"identity": 1,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
|