| Occurrences: |
view occurrences
| id |
3872a04e-001a-4ab7-ac66-4b15ac9ce49b
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S53
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
17.0
|
| id |
a2a134c8-97f5-4342-91cd-7650953de23b
|
| scientificName |
Chaetoceros rostratus
|
| AphiaID |
178201
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S49
|
| target_gene |
18S
|
| DNA_sequence |
TTTGTTGGTTTGCGTACCGAGGTAATGATTAATAGGGACAGTTGGGGGTATTTGTATTCAGTATTCAGTGGTGAAATACTTAGACCTACGGAAGACAAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTATGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros rostratus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178201",
"accession": "X85391.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "HQ869026.1.871_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "AJ535167.1.1799_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Mediophyceae_XXX_sp.",
"accession": "AY426893.1.820_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Chaetoceros peruvianus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:178185",
"accession": "HQ912650.1.1640_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
|