PacMAN decision support system

Potential detection of Polydora ciliata in Fiji

Description:

Potential detection of Polydora ciliata with confidence low on 2023-04-27 in material sample USP-24-01-15, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Polydora ciliata
Annelida > Polychaeta > Spionida > Spionidae
WoRMS: 131141

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

0.994

Reads:

94.0

Names:

Occurrences:

view occurrences

id	d62caf2f-8b36-4e87-b659-b091f8e257f9
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-15
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	94.0

id	d5f03c8b-a017-4123-a7a7-9b4130b4c64d
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-20
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	9.0

id	6e79d8df-6b74-4812-adee-080cdb135db8
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2023-04-27
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	USP-24-01-19
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	8.0

id	3893df4c-df25-44ce-b4be-a0830e067bf0
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-16
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	2.0

id	7ff262e1-5864-4de0-a5e1-1c8f48493f6b
scientificName	Boccardia proboscidea
AphiaID	327249
eventDate	2023-04-27
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	USP-24-01-17
target_gene	18S
DNA_sequence	GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Boccardia proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Polydora_ciliata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131141", "accession": "U50971.1.1684_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardiella_ligerica", "scientificNameID": "urn:lsid:marinespecies.org:taxname:131114", "accession": "AY527061.1.1827_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546254.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546255.1.1763_U", "identity": 0.994, "query_cover": 0.9938 }, { "method": "VSEARCH", "scientificName": "Boccardia_proboscidea", "scientificNameID": "urn:lsid:marinespecies.org:taxname:327249", "accession": "KJ546256.1.1763_U", "identity": 0.994, "query_cover": 0.9938 } ] }
organismQuantity	2.0

Polydora ciliata in Fiji

Status

Polydora ciliata does not have an offial status in Fiji.

Notes

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