| Occurrences: |
view occurrences
| id |
d62caf2f-8b36-4e87-b659-b091f8e257f9
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-15
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
94.0
|
| id |
d5f03c8b-a017-4123-a7a7-9b4130b4c64d
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-20
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
9.0
|
| id |
6e79d8df-6b74-4812-adee-080cdb135db8
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-19
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
8.0
|
| id |
3893df4c-df25-44ce-b4be-a0830e067bf0
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-16
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
7ff262e1-5864-4de0-a5e1-1c8f48493f6b
|
| scientificName |
Boccardia proboscidea
|
| AphiaID |
327249
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-17
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTTTCGGAAGTCGAGGTAATGATTAGTAGGGACGATCCGGGGGCATTCGTATTGCGCGGTTAGAGGTGAAATTCTTGGATCCGCGCAAGACGAACTACAGCGAAGGCGTTTGCCAAGTGCGTCTTCATTAATCAAGAGCGACAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Boccardia proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"confidence": 0.88
},
{
"method": "VSEARCH",
"scientificName": "Polydora_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131141",
"accession": "U50971.1.1684_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardiella_ligerica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131114",
"accession": "AY527061.1.1827_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546254.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546255.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Boccardia_proboscidea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:327249",
"accession": "KJ546256.1.1763_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
|