| Occurrences: |
view occurrences
| id |
3a7ac894-2858-4cd3-b71b-9113bef719b8
|
| scientificName |
Drupella margariticola
|
| AphiaID |
576817
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S150
|
| target_gene |
COI
|
| DNA_sequence |
TTTGGCAGGAAATCTAGCCCATGCTGGAGGTTCTGTAGATCTTGCAATTTTTTCTTTACATCTAGCCGGAGTTTCTTCTATTTTAGGTGCAGTAAATTTTATTACAACTATTATTAATATACGATGGCGAGGAATACAGTTTGAGCGTTTACCACTATTTGTATGGTCTGTTAAAATTACGGCTATTTTACTTTTATTGTCATTGCCTGTATTAGCGGGAGCTATTACTATATTATTAACCGATCGAAATTTTAATACAGCGTTCTTTGATCCTGCAGGAGGTGGAGATCCAATTTTGTATCAACATCTCTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "FR853862",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "FR853879",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "FR853895",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "EU391587",
"identity": 0.994,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "FR853861",
"identity": 0.994,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
12.0
|
| id |
f10b0b4b-dd3b-46b7-9e0d-b601cdd095c7
|
| scientificName |
Drupella margariticola
|
| AphiaID |
576817
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S146
|
| target_gene |
COI
|
| DNA_sequence |
TTAGCAGGGAATCTGGCTCATGCTGGAGGTTCTGTAGATCTTGCAATTTTTTCTTTGCATCTAGCCGGGGTTTCTTCTATTTTAGGTGCAGTAAACTTTATTACAACTATTATTAATATACGGTGACGAGGAATACAGTTTGAGCGCTTACCTTTATTTGTGTGATCTGTTAAAATTACAGCTATTTTACTTCTACTATCTTTACCAGTATTGGCTGGGGCTATTACTATGTTGTTAACTGATCGAAACTTTAATACAGCATTTTTCGACCCAGCAGGAGGTGGGGACCCAATTCTATATCAACATCTCTTT
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": null
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"confidence": 0.98
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "MZ559387",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella margariticola",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:576817",
"accession": "MZ559573",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella cornus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212155",
"accession": "MZ539692",
"identity": 1,
"query_cover": 0.9968
},
{
"method": "VSEARCH",
"scientificName": "Drupella cornus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:212155",
"accession": "MH888184",
"identity": 0.996,
"query_cover": 0.9968
}
]
}
|
| organismQuantity |
1.0
|
|