| Occurrences: |
view occurrences
| id |
3aeacae8-af0d-43b0-8d27-ce252a4d4085
|
| scientificName |
Leptocylindrus
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S16
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTGTGTACGGAAATAATGATTAACAGGAACAGTGTTGTGGGTATTCGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTTACGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGATCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Leptocylindrus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149038",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus sp.",
"accession": "JF305280.1.910_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus sp.",
"accession": "JF305373.1.930_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus danicus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149106",
"accession": "AJ535175.1.1805_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus sp.",
"accession": "GU823199.1.1210_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus aporus",
"accession": "KC814810.1.1751_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
f8e88616-d70b-4403-b86e-1814b0cb2141
|
| scientificName |
Leptocylindrus
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S16
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTGCATTCCACTGGCCTATTGGTTAACTCCAACTTGGCTCATTTGGAATACGCCATCTTTAGGCAGACCCGTCGTGGCATTAGGTTGTCGTGATGGTTACGCCTATCGTTTACTGTGAAGAAATTAGGGTGTTCAAA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Leptocylindrus sp.",
"confidence": 0.83
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus sp.",
"accession": "HQ394112.1.841_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus sp.",
"accession": "HQ394099.1.841_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus danicus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:149106",
"accession": "AJ535175.1.1805_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus aporus",
"accession": "KC814810.1.1751_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Leptocylindrus sp.",
"accession": "GU823199.1.1210_U",
"identity": 0.985,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|