| Occurrences: |
view occurrences
| id |
5defb53e-04ec-4662-beb9-0b75a9006c57
|
| scientificName |
Xylophaga
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-13
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
32.0
|
| id |
8eaa155c-d495-4763-9ead-789499957ad6
|
| scientificName |
Xylophaga
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-12
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
25.0
|
| id |
3b2290b7-c31d-42f4-a581-64a7abe9bd22
|
| scientificName |
Xylophaga
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
USP-24-01-19
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
10.0
|
| id |
884ee195-18dc-40ff-8380-a006979918b6
|
| scientificName |
Xylophaga
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-17
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
7.0
|
| id |
5f3caf88-abd7-42ff-a8cb-deb050843643
|
| scientificName |
Xylophaga
|
| eventDate |
2023-04-27
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-16
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCTCTCGGAGCTCGAGGTAATGATTAACAGGGACTGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGACGAACTACAGCGAAAGCATTTGCCAAGCATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Xylophaga",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138667",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus pedicellatus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:141600",
"accession": "AM774540.1.1791_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora fusticula",
"accession": "JF899216.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Bankia gouldi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156749",
"accession": "JF899204.1.1761_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nausitora dunlopei",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:527839",
"accession": "JF899215.1.1758_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Lyrodus massa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:397095",
"accession": "JF899212.1.1758_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
5.0
|
|