| Occurrences: |
view occurrences
| id |
3b61d797-a5d0-4994-aab6-caa2d712fbb8
|
| scientificName |
Pteria avicular
|
| AphiaID |
464504
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-69
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCACTCCTTGGTGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pteria avicular",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464504",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594368.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594366.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria colymbus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420735",
"accession": "HQ329384.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma physoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507102",
"accession": "HQ329387.1.1773_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria lata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464508",
"accession": "HQ329378.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
ddfc68a5-7526-494a-ab0c-e795ae8d9ee0
|
| scientificName |
Pteria avicular
|
| AphiaID |
464504
|
| eventDate |
2023-11-28
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-67
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGTCCAGGCTTGCGGTCCACTCCTTGGTGGTCACTGCTCGATCCTGACCTACCTGACCGGTTTTTGCCCTTGGTGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGC
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pteria avicular",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464504",
"confidence": 0.97
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594368.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma zebra",
"accession": "AB594366.1.1736_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria colymbus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:420735",
"accession": "HQ329384.1.1754_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Electroma physoides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:507102",
"accession": "HQ329387.1.1773_U",
"identity": 1,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Pteria lata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:464508",
"accession": "HQ329378.1.1775_U",
"identity": 1,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|