| Occurrences: |
view occurrences
| id |
3bb10d6c-af5a-4a94-b428-466c50180fb6
|
| scientificName |
Watersipora subtorquata
|
| AphiaID |
111592
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S13
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCAAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAACGTCAGACGCGGGAGGGCGGACGGCCGTACCGGTCGCACTCGCCCGACCGAGCCAGGCGCGGAGGGCGCGCGTCGCTTGCACTTCGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Watersipora subtorquata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111592",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Watersipora_subtorquata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111592",
"accession": "JN680947.1.1836_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Scrupocellaria_scruposa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111250",
"accession": "FJ196128.1.1371_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
f08b6d91-71e0-4ff4-8e3d-a79f363f3fc4
|
| scientificName |
Watersipora subtorquata
|
| AphiaID |
111592
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S16
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCAAGCAGCGTATATTTATATTGCTGCGTTTAAAAAGCTCGTAGTTGAAACGTCAGACGCGGGAGGGCGGACGGCCGTACCGGTCGCACTCGCCCGACCGAGCCAGGCGCGGAGGGCGCGCGTCGCTTGCACTTCGCCGTGTGAGCGCGCCGCCGCTGCACGTTCACCTTGAAGAAATTGAACCGCTTAGAG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Watersipora subtorquata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111592",
"confidence": 0.84
},
{
"method": "VSEARCH",
"scientificName": "Watersipora_subtorquata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111592",
"accession": "JN680947.1.1836_U",
"identity": 0.986,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Scrupocellaria_scruposa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111250",
"accession": "FJ196128.1.1371_U",
"identity": 0.976,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Bugula_turrita",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:159783",
"accession": "AY210443.1.1841_U",
"identity": 0.971,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Cryptosula_pallasiana",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111343",
"accession": "FJ196129.1.1578_U",
"identity": 0.971,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
|