| Occurrences: |
view occurrences
| id |
fe2255e6-3d78-46d2-a75b-789f887d7c78
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-58
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
3bdf951a-26ae-4064-ac19-7eff8b076bb1
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-56
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
b4ab0b06-a277-4472-b7f8-3d268445de3f
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-55
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
e9be0214-28a9-47f3-9e7a-0f2d7cbb50d9
|
| scientificName |
Syllis gracilis
|
| AphiaID |
131435
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-54
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTCGAGATAATGATTAAGAGGGACAGACGGGGGCATCCGTACTGCGGCGTTAGAGGTGAAATTCTTGGATCGCCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Syllis gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "EF123876.1.1851_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Typosyllis_armillaris",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:156681",
"accession": "AF474292.1.1823_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_ypsiloides",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:762353",
"accession": "JF903673.1.1895_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Syllis_gracilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131435",
"accession": "JF903660.1.1868_U",
"identity": 0.988,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Sphaerosyllis_bardukaciculata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:389241",
"accession": "EF123842.1.1775_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|