| Occurrences: |
view occurrences
| id |
aaf67aaa-1d83-4b12-a61a-ab71dc5f0946
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-27
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
33.0
|
| id |
affc127b-76c1-4c0a-8fc6-e58136749fb9
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-26
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
27.0
|
| id |
3c8a3d24-dc78-4014-8fa3-928ee491bc5e
|
| scientificName |
Hymeniacidon perlevis
|
| AphiaID |
132663
|
| eventDate |
2023-05-31
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
USP-24-01-28
|
| target_gene |
18S
|
| DNA_sequence |
TTGTTGGTTTCTAGGGCCGAAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTAGTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTAGGGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Hymeniacidon sinapium",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165916",
"confidence": 0.85
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_perlevis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:132663",
"accession": "KC902358.1.1720_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Hymeniacidon_caerulea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:165882",
"accession": "KC902350.1.1721_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "AJ627184.1.1790_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_domuncula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134282",
"accession": "AJ620112.1.1738_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Suberites_ficus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:134285",
"accession": "KC902236.1.1719_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
23.0
|
|