PacMAN decision support system

Potential detection of Symplegma viride in Fiji

Description:

Potential detection of Symplegma viride with confidence low on 2022-05-25 in material sample S65, marker 18S

Confidence:

low

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Symplegma viride
Chordata > Ascidiacea > Stolidobranchia > Styelidae
WoRMS: 212501

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

3597.0

Names:

4

Occurrences:

view occurrences

id	bcbc885e-bf4a-455a-aeb9-5484507cf8ea
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S65
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	3597.0

id	3e7aee5d-4209-4f2c-b89a-f16d1c1f3555
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S63
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	620.0

id	46465742-3166-4f8a-b652-c10a9b50424c
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S46
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	99.0

id	9fbb3570-d070-4ce6-8219-b5c20c260980
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S45
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	55.0

id	5a5b07c1-5ebf-46b8-a887-7f7c9488a769
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S48
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	30.0

id	472ffb45-9867-48c2-9765-1fc6257a2c0a
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S47
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	16.0

id	9d6857c4-d80c-4917-acd9-d919c3958a12
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S64
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCGGCGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 1 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_planus", "scientificNameID": "urn:lsid:marinespecies.org:taxname:215992", "accession": "DQ346653.1.1798_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botrylloides_violacea", "accession": "AY903927.1.1803_U", "identity": 0.976, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Botryllus_schlosseri", "scientificNameID": "urn:lsid:marinespecies.org:taxname:103862", "accession": "AB211066.1.1750_U", "identity": 0.971, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	80356a8b-eeae-47dd-bb32-d15307a9c43d
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S65
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	25.0

id	b6845aa1-5bbf-49d7-b628-7b6dc0ee82fa
scientificName	Symplegma
eventDate	2022-05-25
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S63
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAACAGTGTATGCTAAAGTTGTTGCGGTTGAAAAGCTCGTAGTTGGATCTTGGGCGGGCGCGGTCGGTCCGTCGCAGGGCGTGCACTGGTCGCGTCCGCCTCGCCTTCGGTTCTTCGTCGGTGCTCTTGACTGAGTGTCAGTGGTGGCCGAGAAGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Symplegma", "scientificNameID": "urn:lsid:marinespecies.org:taxname:206885", "confidence": 0.99 }, { "method": "VSEARCH", "scientificName": "Symplegma_reptans", "scientificNameID": "urn:lsid:marinespecies.org:taxname:251438", "accession": "AF165826.1.1066_U", "identity": 0.99, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Symplegma_viride", "scientificNameID": "urn:lsid:marinespecies.org:taxname:212501", "accession": "DQ346655.1.1765_U", "identity": 0.99, "query_cover": 0.9952 } ] }
organismQuantity	13.0

Symplegma viride in Fiji

Status

Symplegma viride does not have an offial status in Fiji.

Notes

No notes found.