| Occurrences: |
view occurrences
| id |
986e6883-77a4-4cae-9de1-ad2364c8bd1c
|
| scientificName |
Nephtys
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S28
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
15.0
|
| id |
3ecf747d-3541-4eb5-a14e-8073996d0898
|
| scientificName |
Nephtys
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S33
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
cf98a463-f723-451c-9077-1e338f5c1a7b
|
| scientificName |
Nephtys
|
| eventDate |
2021-12-07
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S29
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATGATGGTGTTAGAGGTGAAATTCTTGGATCGCCGTCAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Nephtys",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:129370",
"confidence": 0.89
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hombergii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130359",
"accession": "U50970.1.1764_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_ciliata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130356",
"accession": "GU179373.1.1773_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_circinata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:157145",
"accession": "DQ790072.1.1732_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Nephtys_hystricis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:130360",
"accession": "GU179378.1.1165_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Aglaophamus_groenlandiae",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:173681",
"accession": "GQ426583.1.1655_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|