Occurrences: |
view occurrences
id |
49334ddf-6d62-4c3f-95cf-8b87b3cff33b
|
scientificName |
Pyura
|
eventDate |
2022-02-16
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S43
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
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},
"annotations": [
{
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"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Metandrocarpa_taylori",
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},
{
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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{
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}
]
}
|
organismQuantity |
861.0
|
id |
542388ae-031f-4202-85ce-465212f5f09f
|
scientificName |
Pyura
|
eventDate |
2022-02-16
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S9
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
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"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
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},
{
"method": "VSEARCH",
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},
{
"method": "VSEARCH",
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"accession": "AB013016.1.1751_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Cnemidocarpa_finmarkiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103870",
"accession": "L12413.1.1763_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_haustor",
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"accession": "AY903926.1.1774_U",
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},
{
"method": "VSEARCH",
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}
]
}
|
organismQuantity |
353.0
|
id |
83880025-8ddd-4e87-9787-c49dc6b0d886
|
scientificName |
Pyura
|
eventDate |
2022-02-16
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S21
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Metandrocarpa_taylori",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250836",
"accession": "AY903922.1.1772_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_roretzi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250680",
"accession": "AB013016.1.1751_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Cnemidocarpa_finmarkiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103870",
"accession": "L12413.1.1763_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_haustor",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251266",
"accession": "AY903926.1.1774_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_igaboja",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250677",
"accession": "AY903925.1.1772_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
organismQuantity |
142.0
|
id |
3f67b3e5-7355-4403-bc12-abbf13aa14ff
|
scientificName |
Pyura
|
eventDate |
2022-02-16
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S22
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Metandrocarpa_taylori",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250836",
"accession": "AY903922.1.1772_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_roretzi",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250680",
"accession": "AB013016.1.1751_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Cnemidocarpa_finmarkiensis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103870",
"accession": "L12413.1.1763_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Pyura_haustor",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:251266",
"accession": "AY903926.1.1774_U",
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},
{
"method": "VSEARCH",
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}
]
}
|
organismQuantity |
75.0
|
id |
47e2d208-c140-4c2d-a013-0498d55e15dc
|
scientificName |
Pyura
|
eventDate |
2022-02-16
|
decimalLongitude |
178.425933
|
decimalLatitude |
-18.1293
|
materialSampleID |
S8
|
target_gene |
18S
|
DNA_sequence |
TGTTGGTTTTCGGAGCGCGAGGTAATGATTAAGAGGGACAGACGGGGGCGTCCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGAACTACTGCGAAAGCATTCGCCAAGAATGTTTTCTTTAATCAAGAGCGAAAGTCAGAGGTTCG
|
identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pyura",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:103524",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Metandrocarpa_taylori",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:250836",
"accession": "AY903922.1.1772_U",
"identity": 1,
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},
{
"method": "VSEARCH",
"scientificName": "Halocynthia_roretzi",
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"accession": "AB013016.1.1751_U",
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},
{
"method": "VSEARCH",
"scientificName": "Cnemidocarpa_finmarkiensis",
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"accession": "L12413.1.1763_U",
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},
{
"method": "VSEARCH",
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"accession": "AY903926.1.1774_U",
"identity": 1,
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},
{
"method": "VSEARCH",
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}
]
}
|
organismQuantity |
2.0
|
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