| Occurrences: |
view occurrences
| id |
3f6848a3-eb42-48da-931f-e9ee5e6931c6
|
| scientificName |
Pseudocyclops
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S73
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCAGAAATCGACGTAATGATTAACAGGGACGGTCGGGGGCATTTGTATTCAAACGACAGAGGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudocyclops",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104212",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Pseudocyclops juanibali",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:590078",
"accession": "KF753809.1.1694_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pseudocyclops xiphophorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220651",
"accession": "MF077785.1.1640_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eudiaptomus sp.",
"accession": "GU067907.1.868_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Exumella mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104762",
"accession": "AY629259.1.1805_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Maxillopoda_X_sp.",
"accession": "HQ865057.1.871_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
| id |
bfc83c2d-3f9e-4716-9929-44546beff48f
|
| scientificName |
Pseudocyclops
|
| eventDate |
2022-11-23
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S71
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTTTTCAGAAATCGACGTAATGATTAACAGGGACGGTCGGGGGCATTTGTATTCAAACGACAGAGGTGAAATTCTTGGACCGTTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Pseudocyclops",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104212",
"confidence": 0.8
},
{
"method": "VSEARCH",
"scientificName": "Pseudocyclops juanibali",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:590078",
"accession": "KF753809.1.1694_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Pseudocyclops xiphophorus",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:220651",
"accession": "MF077785.1.1640_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Eudiaptomus sp.",
"accession": "GU067907.1.868_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Exumella mediterranea",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:104762",
"accession": "AY629259.1.1805_U",
"identity": 0.981,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Maxillopoda_X_sp.",
"accession": "HQ865057.1.871_U",
"identity": 0.975,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|