| Occurrences: |
view occurrences
| id |
3f6e27c9-4b69-4707-8e74-5aff39dcfa0f
|
| scientificName |
Erinaceusyllis
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S41
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCCTCCGGAGCTCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Erinaceusyllis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195949",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_cryptica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195952",
"accession": "JF913964.1.1274_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:759888",
"accession": "JF903589.1.1800_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_serratosetosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195954",
"accession": "JF903593.1.1807_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
4.0
|
| id |
96a3daa5-3728-4b20-b9c5-4589e8d739af
|
| scientificName |
Erinaceusyllis
|
| eventDate |
2022-06-20
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
S35
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGCCTCCGGAGCTCGAGGTAATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGGGGTTAGAGGTGAAATTCTTGGATCCTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Erinaceusyllis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195949",
"confidence": 0.95
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_cryptica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195952",
"accession": "JF913964.1.1274_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_bidentata",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:759888",
"accession": "JF903589.1.1800_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Erinaceusyllis_serratosetosa",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:195954",
"accession": "JF903593.1.1807_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|