| Occurrences: |
view occurrences
| id |
cc012e34-1fb5-47ae-9173-c1566347cc2c
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-59
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
28.0
|
| id |
40fef493-02ae-4974-a001-0346967751e3
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-57
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
6.0
|
| id |
a53eb665-53ea-4a35-9f26-c555ce88c276
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-58
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
3.0
|
| id |
99d9ca40-c678-4bba-99c8-e84210c86cbf
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-54
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
2.0
|
| id |
f42b7c34-5acc-4e99-9871-9ab2bf230289
|
| scientificName |
Celleporina caliciformis
|
| AphiaID |
221538
|
| eventDate |
2023-08-15
|
| decimalLongitude |
178.425933
|
| decimalLatitude |
-18.1293
|
| materialSampleID |
USP-24-01-55
|
| target_gene |
18S
|
| DNA_sequence |
GTTGGTTAGAGAGTTGGCGAGCCAATGATTAACAGGGACTGCCGGGGGCATTCGTACTCGGACGGGAGAGGTGAAATTCAAGGATCGTCCGAAGACGCCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTGCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Celleporina hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"confidence": 0.82
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "JN680945.1.1833_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizoporella_dunkeri",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111525",
"accession": "JN680955.1.1836_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Celleporina_hassallii",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111274",
"accession": "FJ152028.1.1730_U",
"identity": 1,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Schizomavella_linearis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111099",
"accession": "JN680946.1.1355_U",
"identity": 0.994,
"query_cover": 0.9938
},
{
"method": "VSEARCH",
"scientificName": "Phaeostachys_spinifera",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:111521",
"accession": "FJ152039.1.1788_U",
"identity": 0.994,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
1.0
|
|