| Occurrences: |
view occurrences
| id |
80ff6e2d-81e9-4dc4-b752-34dfc2c61c4d
|
| scientificName |
Aplysia
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S1
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGGTGCAGGCGGGCGGTCCGGCTCGCGCCGGTTCACTGCCCGTATCTCCTGCCCTACCCGTCTGCCGGCTCTCTCCCGCGGGTGCTCTTTGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Aplysia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137654",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02063790.929.2777_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia sp.",
"accession": "X94268.22.1826_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02062549.10.1551_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia parvula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138757",
"accession": "HQ834052.1.1821_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02063113.739.2585_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
169.0
|
| id |
4201b593-27b8-488f-9e15-e6b82717af32
|
| scientificName |
Aplysia
|
| eventDate |
2022-02-01
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S7
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCAGGTGCAGGCGGGCGGTCCGGCTCGCGCCGGTTCACTGCCCGTATCTCCTGCCCTACCCGTCTGCCGGCTCTCTCCCGCGGGTGCTCTTTGCTGAGCGTCCCGGGTGGCCGGTGCGTTTACTTTGAAAAAATTAGAGTG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Aplysia",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:137654",
"confidence": 0.81
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02063790.929.2777_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia sp.",
"accession": "X94268.22.1826_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02062549.10.1551_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia parvula",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:138757",
"accession": "HQ834052.1.1821_U",
"identity": 0.99,
"query_cover": 0.9952
},
{
"method": "VSEARCH",
"scientificName": "Aplysia californica",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:240765",
"accession": "AASC02063113.739.2585_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
5.0
|
|