| Occurrences: |
view occurrences
| id |
bd71dd40-a54f-4f92-9446-fba58749a9ca
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S81
|
| target_gene |
18S
|
| DNA_sequence |
TGTTGGTCTTCGGAACCCGAGATAATGATTGAGAGGGACAGACGGGGGCACTTGTACTGCGGCGTGAGAGGTGAAATTCTTGGACCGTCGCAAGACAAACCCAGGCGAAAGCATTTGCCCAGAATGTTTTCATTAATCAAGAACGAAAGTCAGAGGTTCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903583.1.1887_U",
"identity": 1,
"query_cover": 0.9938
}
]
}
|
| organismQuantity |
51.0
|
| id |
45df87c9-53e3-472d-90eb-4181416d5a7b
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S74
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCTTCACGTGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGTGCGCCCCTGTGCGTTGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903584.1.1886_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
2.0
|
| id |
97ff3bc9-e6d5-46a7-981c-c5d3c58bb1aa
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.4255
|
| decimalLatitude |
-18.13163
|
| materialSampleID |
S77
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGACGCCTTCACGTGGTCTCGCGGGCACAGGCCAAGTCCACCCGCGGTGCACTGCTGAGGGCTCCCCTCTGGCGGGGGGGTGCGCCCCTGTGCGTTGCCCTGCGAGAGCAGTCGCCGGTGCCCTTGACTGGGCCGCCG
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
},
{
"method": "VSEARCH",
"scientificName": "Branchiosyllis_exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"accession": "JF903584.1.1886_U",
"identity": 0.99,
"query_cover": 0.9952
}
]
}
|
| organismQuantity |
1.0
|
| id |
43b57c29-f1cc-4ec8-97fc-ef065399cb40
|
| scientificName |
Branchiosyllis exilis
|
| AphiaID |
131279
|
| eventDate |
2022-10-03
|
| decimalLongitude |
178.42325
|
| decimalLatitude |
-18.13513
|
| materialSampleID |
S81
|
| target_gene |
18S
|
| DNA_sequence |
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATCTGGGGACGCCCTCTGTTGGTCCTGTGGGCAGACAGCTCCCGCAGCGCACTGCTGAGGGCTCCCAAGTGGCGGGGGGGCTCAGTGTTTCCCTCTTCACCGGGGGTGCTGTGGCCCTGCGCGAGCAGTCTCCGGTGTCATTGA
|
| identificationRemarks |
{
"pipeline": "PacMAN pipeline",
"parameters": {
"rdp_confidence_threshold": 0.8,
"vsearch_identity_threshold": 0.97,
"vsearch_cover_threshold": 0.97,
"basta_identity_threshold": 99
},
"annotations": [
{
"method": "RDP classifier",
"scientificName": "Branchiosyllis exilis",
"scientificNameID": "urn:lsid:marinespecies.org:taxname:131279",
"confidence": 1
}
]
}
|
| organismQuantity |
49.0
|
|