PacMAN decision support system

Potential detection of Pseudo-nitzschia seriata in Fiji

Description:

Potential detection of Pseudo-nitzschia seriata with confidence medium on 2022-02-01 in material sample S16, marker 18S

Confidence:

medium

Risk:

low view risk analysis

Status:

unreviewed

Area:

Fiji

Taxon:

Pseudo-nitzschia seriata
Heterokontophyta > Bacillariophyceae > Bacillariales > Bacillariaceae
WoRMS: 149152

Created:

Nov. 5, 2024

Created by:

pacmandetections (UNESCO)

Top hit:

1.0

Reads:

14.0

Names:

Occurrences:

view occurrences

id	8ce6fc05-d576-4dd3-9327-83ac68ee05df
scientificName	Pseudo-nitzschia seriata
AphiaID	149152
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S16
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia turgidula", "scientificNameID": "urn:lsid:marinespecies.org:taxname:246609", "accession": "FJ222752.1.1219_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771191.1.1787_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771189.1.1788_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "JF698747.1.1613_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "HM581774.1.1772_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	14.0

id	f62cd679-93b2-4137-8096-d0a79b8e4f4c
scientificName	Pseudo-nitzschia seriata
AphiaID	149152
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S18
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia turgidula", "scientificNameID": "urn:lsid:marinespecies.org:taxname:246609", "accession": "FJ222752.1.1219_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771191.1.1787_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771189.1.1788_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "JF698747.1.1613_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "HM581774.1.1772_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	8.0

id	44ea9522-0970-4e9f-a307-2cd8ac77eb08
scientificName	Pseudo-nitzschia seriata
AphiaID	149152
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S19
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia turgidula", "scientificNameID": "urn:lsid:marinespecies.org:taxname:246609", "accession": "FJ222752.1.1219_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771191.1.1787_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771189.1.1788_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "JF698747.1.1613_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "HM581774.1.1772_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	7.0

id	d696440d-c5b7-42ff-8122-670c486efbba
scientificName	Pseudo-nitzschia seriata
AphiaID	149152
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S13
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia turgidula", "scientificNameID": "urn:lsid:marinespecies.org:taxname:246609", "accession": "FJ222752.1.1219_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771191.1.1787_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771189.1.1788_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "JF698747.1.1613_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "HM581774.1.1772_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	7.0

id	b4a43a9b-2966-449a-bff7-31a4f3bc123c
scientificName	Pseudo-nitzschia seriata
AphiaID	149152
eventDate	2022-02-01
decimalLongitude	178.4255
decimalLatitude	-18.13163
materialSampleID	S17
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia turgidula", "scientificNameID": "urn:lsid:marinespecies.org:taxname:246609", "accession": "FJ222752.1.1219_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771191.1.1787_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771189.1.1788_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "JF698747.1.1613_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "HM581774.1.1772_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	2.0

id	9b275a8c-7f48-429c-9845-d34778b584f8
scientificName	Pseudo-nitzschia seriata
AphiaID	149152
eventDate	2022-02-01
decimalLongitude	178.42325
decimalLatitude	-18.13513
materialSampleID	S15
target_gene	18S
DNA_sequence	AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGTGTGTCCAGTCGGCCTTTGCTCTTTGAGTGATTGTGCTGTACTGGTCTGCCATGTTTGGGTGGAATCTGTGTGGCATTAAGTTGTCGTGCAGGGGATGCCCATCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGC
identificationRemarks	{ "pipeline": "PacMAN pipeline", "parameters": { "rdp_confidence_threshold": 0.8, "vsearch_identity_threshold": 0.97, "vsearch_cover_threshold": 0.97, "basta_identity_threshold": 99 }, "annotations": [ { "method": "RDP classifier", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "confidence": 0.88 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia turgidula", "scientificNameID": "urn:lsid:marinespecies.org:taxname:246609", "accession": "FJ222752.1.1219_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771191.1.1787_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Bacillariophyceae_XXX_sp.", "accession": "KC771189.1.1788_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "JF698747.1.1613_U", "identity": 1, "query_cover": 0.9952 }, { "method": "VSEARCH", "scientificName": "Pseudo-nitzschia seriata", "scientificNameID": "urn:lsid:marinespecies.org:taxname:149152", "accession": "HM581774.1.1772_U", "identity": 1, "query_cover": 0.9952 } ] }
organismQuantity	1.0

Pseudo-nitzschia seriata in Fiji

Status

Pseudo-nitzschia seriata does not have an offial status in Fiji.

Notes

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